lilab-bcb / cirrocumulus Star 79 Code Issues Pull requests Bring your single-cell data to life visualization webgl bioinformatics spatial data-visualization scrna-seq transcriptomics single-cell 10x smartseq2 seurat scanpy anndata Updated Mar 3, 2025 JavaScript
ComputationalSystemsBiology / Single-cell-RNA-seq Star 7 Code Issues Pull requests Workflows for handling automatic single-cell RNA seq analysis dropseq smartseq2 Updated Jul 31, 2018 Java
ebi-gene-expression-group / scxa-tertiary-workflow Star 1 Code Issues Pull requests Tertiary component for SCXA workflows rna-seq pipeline nextflow protein single-cell 10xgenomics smartseq2 Updated Mar 31, 2025 Nextflow
chooliu / snmCTseq_Pipeline Star 0 Code Issues Pull requests Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles. single-cell-rna-seq smartseq2 single-cell-methylation single-cell-multiomics snmct-seq Updated Mar 17, 2024 Jupyter Notebook