A Python toolbox for quantitative, reproducible flow cytometry analysis
(Legacy project) A modular laboratory experiment management suite, predecessor to qudi-core.
Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)
Self-supervised models for encoding protein localization patterns from microscopy images
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.
Resolution Enhancement Algorithm using Deblurring by Pixel Reassignment. This repository implements cutting-edge techniques for improving image resolution and clarity by reassigning pixels to correct for blur. Ideal for microscopy, photography, image processing, and computational optics researchers.
An interactive image processing program for biologists written in Python.
GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy (Sample data: https://gitlab.peulen.xyz/skf/tttr-data)
Utilities for pre-processing emission-excitation-matrix (EEM).
Modeling and Bayesian analysis of fluorescence and absorbance assays.
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
[MICCAI 2023] This is the official code for the paper "A Feature-Driven Richardson-Lucy Deconvolution Network"
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
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