Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Python wraper for MetaMap

MNE-CPP: A Framework for Electrophysiology

Ontology for consent codes and data use requirements

Alaska Project Ideas, mentored by the researchers and collaborators of University of Alaska and supported by open-source entities and enthusiasts in Alaska.

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…

Computational Analysis of Novel Drug Opportunities

Package for biomedical data model and metadata ingress management

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

BioMedICUS: A biomedical and clinical NLP engine.

MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)

R package for delineating temporal dataset shifts in Eletronic Health Records

Programming for Biomedical Informatics, School of Informatics, The University of Edinburgh

Website for the JuliaHealth organization (powered by Franklin.jl).

Build project for all CEDAR Java repositories

📎 About MIDA Project

CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes.

A software toolkit for the interconversion of standard data models for phenotypic data