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obophenotype

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  1. human-phenotype-ontology human-phenotype-ontology Public

    Ontology for the description of human clinical features

    Makefile 305 53

  2. cell-ontology cell-ontology Public

    An ontology of cell types

    Makefile 168 53

  3. uberon uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    Emacs Lisp 138 30

  4. upheno upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    Makefile 79 18

  5. bio-attribute-ontology bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    Jupyter Notebook 27 11

  6. ncbitaxon ncbitaxon Public

    Build for NCBITaxon

    Python 27 7

Repositories

Showing 10 of 63 repositories
  • cell-ontology Public

    An ontology of cell types

    obophenotype/cell-ontology’s past year of commit activity
    Makefile 168 CC-BY-4.0 53 284 23 Updated Apr 4, 2025
  • uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    obophenotype/uberon’s past year of commit activity
    Emacs Lisp 138 30 310 (2 issues need help) 22 Updated Apr 4, 2025
  • c-elegans-development-ontology Public

    C. elegans Development Ontology

    obophenotype/c-elegans-development-ontology’s past year of commit activity
    Makefile 5 CC-BY-4.0 2 0 0 Updated Apr 1, 2025
  • c-elegans-phenotype-ontology Public

    Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase

    obophenotype/c-elegans-phenotype-ontology’s past year of commit activity
    Makefile 11 CC-BY-4.0 4 3 0 Updated Apr 1, 2025
  • upheno-dev Public

    Framework for the automated construction of uPheno 2.0

    obophenotype/upheno-dev’s past year of commit activity
    Jupyter Notebook 5 MIT 5 37 7 Updated Mar 31, 2025
  • bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    obophenotype/bio-attribute-ontology’s past year of commit activity
    Jupyter Notebook 27 CC0-1.0 11 81 7 Updated Mar 28, 2025
  • c-elegans-gross-anatomy-ontology Public

    C. elegans Gross Anatomy Ontology

    obophenotype/c-elegans-gross-anatomy-ontology’s past year of commit activity
    Makefile 7 CC-BY-4.0 2 7 0 Updated Mar 26, 2025
  • ascomycete-phenotype-ontology Public
    obophenotype/ascomycete-phenotype-ontology’s past year of commit activity
    Shell 4 CC-BY-4.0 3 1 0 Updated Mar 25, 2025
  • human-phenotype-ontology Public

    Ontology for the description of human clinical features

    obophenotype/human-phenotype-ontology’s past year of commit activity
    Makefile 305 53 239 9 Updated Mar 23, 2025
  • developmental-stage-ontologies Public

    Source files for various species-specific stage ontologies

    obophenotype/developmental-stage-ontologies’s past year of commit activity
    Makefile 10 5 52 0 Updated Mar 18, 2025
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