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@Multiomics-Analytics-Group

Multi-omics Network Analytics Group

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  1. course_protein_language_modeling course_protein_language_modeling Public

    Jupyter Notebook 33 9

  2. vuegen vuegen Public

    VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply …

    Python 15

  3. MicW2Graph MicW2Graph Public

    A knowledge graph of the wastewater treatment microbiome and its biological context

    HTML 4

  4. pubmed-rag pubmed-rag Public

    A playground for RAG development from pubmed API

    Jupyter Notebook 4 1

  5. course_synthetic_biology_data course_synthetic_biology_data Public

    Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories

    2

  6. nf-vuegen nf-vuegen Public

    nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like…

    Nextflow 2

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Showing 10 of 20 repositories
  • vuegen Public

    VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.

    Multiomics-Analytics-Group/vuegen’s past year of commit activity
    Python 15 MIT 0 20 3 Updated Apr 8, 2025
  • FermentDB Public

    FermentDB: A Database for High-cell Density Fermentations

    Multiomics-Analytics-Group/FermentDB’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 8, 2025
  • nf-vuegen Public

    nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

    Multiomics-Analytics-Group/nf-vuegen’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Apr 2, 2025
  • vuecore Public

    Visualization library for omics data

    Multiomics-Analytics-Group/vuecore’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Mar 28, 2025
  • multiomics-analytics-group.github.io Public Forked from poole/hyde

    MoNA Group Website

    Multiomics-Analytics-Group/multiomics-analytics-group.github.io’s past year of commit activity
    HTML 0 4,043 0 0 Updated Mar 27, 2025
  • acore Public

    Functionality to preprocess and analyse multi-omics data

    Multiomics-Analytics-Group/acore’s past year of commit activity
    Python 0 0 11 3 Updated Mar 21, 2025
  • pubmed-rag Public

    A playground for RAG development from pubmed API

    Multiomics-Analytics-Group/pubmed-rag’s past year of commit activity
    Jupyter Notebook 4 MIT 1 0 0 Updated Mar 19, 2025
  • Retrieve_info_MGnifyAPI Public

    Scripts to get information from MGnify programmatically using its API

    Multiomics-Analytics-Group/Retrieve_info_MGnifyAPI’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Mar 2, 2025
  • ckg Public Forked from MannLabs/CKG

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

    Multiomics-Analytics-Group/ckg’s past year of commit activity
    Jupyter Notebook 1 MIT 105 0 0 Updated Jan 21, 2025
  • course_graph_machine_learning Public

    This is part of an AI course

    Multiomics-Analytics-Group/course_graph_machine_learning’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Jan 13, 2025
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